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C
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D
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E
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G
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H
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I
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J
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L
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M
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N
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Q
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R
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S
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V
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X
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Y
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Z
A
AbstractOligoItem (class in cadnano.gui.views.abstractitems.abstractoligoitem)
abstractSeq() (Strand method)
AbstractStrandItemController (class in cadnano.gui.controllers.itemcontrollers.strand.abstractstranditemcontroller)
AbstractVirtualHelixItem (class in cadnano.gui.views.abstractitems.abstractvirtualhelixitem)
addCommand() (UndoCommand method)
addFace() (Solid method)
addInsertion() (Strand method)
AddInsertionCommand (class in cadnano.strand.insertioncmd)
addInstance() (Assembly method)
AddInstanceCommand (class in cadnano.addinstancecmd)
AddModCommand (class in cadnano.docmodscmd)
addMods() (Strand method)
AddModsCommand (class in cadnano.strand.modscmd)
addToPart() (Oligo method)
addVectors() (in module cadnano.math.vector)
addVertex() (Solid method)
allClose() (in module cadnano.pointquadtree)
app() (in module cadnano)
appendUndoStack() (UndoStack method)
applyAbstractSequence() (Strand method)
applyAbstractSequences() (Oligo method)
applyColor() (Oligo method)
ApplyColorCommand (class in cadnano.oligo.applycolorcmd)
applyMatrix() (Solid method)
applyMatrix3() (in module cadnano.math.vector)
applyMatrix4() (in module cadnano.math.vector)
applySequence() (Oligo method)
applySequenceCMD() (Oligo method)
ApplySequenceCommand (class in cadnano.oligo.applysequencecmd)
Assembly (class in cadnano.assembly)
assemblyDestroyedSignal (Assembly attribute)
assemblyInstanceAddedSignal (Assembly attribute)
B
BaseObject (in module cadnano.cnproxy)
beginMacro() (UndoStack method)
beginSuperMacro() (in module cadnano.util)
Box (class in cadnano.math.box)
C
cadnano (module)
cadnano.addinstancecmd (module)
cadnano.assembly (module)
cadnano.cnobject (module)
cadnano.cnproxy (module)
cadnano.color (module)
cadnano.data (module)
cadnano.data.dnasequences (module)
cadnano.data.fasta (module)
cadnano.data.genbank (module)
cadnano.data.sequencemods (module)
cadnano.decorators (module)
cadnano.decorators.insertion (module)
cadnano.docmodscmd (module)
cadnano.fileio (module)
cadnano.fileio.lattice (module)
cadnano.fileio.v3decode (module)
cadnano.fileio.v3encode (module)
cadnano.gui (module)
cadnano.gui.controllers (module)
cadnano.gui.controllers.itemcontrollers (module)
cadnano.gui.controllers.itemcontrollers.nucleicacidpartitemcontroller (module)
cadnano.gui.controllers.itemcontrollers.oligoitemcontroller (module)
cadnano.gui.controllers.itemcontrollers.partitemcontroller (module)
cadnano.gui.controllers.itemcontrollers.strand (module)
cadnano.gui.controllers.itemcontrollers.strand.abstractstranditemcontroller (module)
cadnano.gui.controllers.itemcontrollers.strand.endpointitemcontroller (module)
cadnano.gui.controllers.itemcontrollers.strand.stranditemcontroller (module)
cadnano.gui.controllers.itemcontrollers.virtualhelixitemcontroller (module)
cadnano.gui.controllers.viewrootcontroller (module)
cadnano.gui.plugins (module)
cadnano.gui.plugins.dummyplugin (module)
cadnano.gui.ui (module)
cadnano.gui.ui.dialogs (module)
cadnano.gui.ui.mainwindow (module)
cadnano.gui.views (module)
cadnano.gui.views.abstractitems (module)
cadnano.gui.views.abstractitems.abstractoligoitem (module)
cadnano.gui.views.abstractitems.abstractvirtualhelixitem (module)
cadnano.gui.views.outlinerview (module)
cadnano.gui.views.outlinerview.outlinerstyles (module)
cadnano.gui.views.pathview (module)
cadnano.gui.views.pathview.strand (module)
cadnano.gui.views.pathview.strand.decorators (module)
cadnano.gui.views.pathview.tools (module)
cadnano.gui.views.propertyview (module)
cadnano.gui.views.sliceview (module)
cadnano.gui.views.sliceview.tools (module)
cadnano.gui.views.styles (module)
cadnano.math (module)
cadnano.math.box (module)
cadnano.math.face (module)
cadnano.math.matrix3 (module)
cadnano.math.matrix4 (module)
cadnano.math.solid (module)
cadnano.math.vector (module)
cadnano.objectinstance (module)
cadnano.oligo (module)
cadnano.oligo.applycolorcmd (module)
cadnano.oligo.applysequencecmd (module)
cadnano.oligo.oligo (module)
cadnano.oligo.removeoligocmd (module)
cadnano.part (module)
cadnano.part.createvhelixcmd (module)
cadnano.part.part (module)
cadnano.part.refresholigoscmd (module)
cadnano.part.refreshsegmentscmd (module)
cadnano.part.removepartcmd (module)
cadnano.part.removevhelixcmd (module)
cadnano.part.renumbercmd (module)
cadnano.part.resizevirtualhelixcmd (module)
cadnano.part.translatevhelixcmd (module)
cadnano.part.xovercmds (module)
cadnano.pointquadtree (module)
cadnano.preferences (module)
cadnano.proxyconfigure (module)
cadnano.removeinstancecmd (module)
cadnano.strand (module)
cadnano.strand.insertioncmd (module)
cadnano.strand.modscmd (module)
cadnano.strand.resizecmd (module)
cadnano.strand.strand (module)
cadnano.strandset (module)
cadnano.strandset.createstrandcmd (module)
cadnano.strandset.mergecmd (module)
cadnano.strandset.removestrandcmd (module)
cadnano.strandset.splitcmd (module)
cadnano.strandset.strandset (module)
cadnano.undocommand (module)
cadnano.undostack (module)
cadnano.util (module)
canInstallXoverAt() (Strand method)
canRedo() (UndoStack method)
canResizeTo() (Strand method)
canUndo() (UndoStack method)
center() (Box method)
changeInsertion() (Strand method)
ChangeInsertionCommand (class in cadnano.strand.insertioncmd)
changeInstanceProperty() (Part method)
clamp() (in module cadnano.util)
clearAbstractSequence() (Strand method)
clearAbstractSequences() (Oligo method)
clearDecoratorCommands() (Strand method)
clearInsertionsCommands() (Strand method)
clone() (Box method)
cnModel() (AbstractVirtualHelixItem method)
CNObject (class in cadnano.cnobject)
Color (class in cadnano.color)
comp() (in module cadnano.util)
complementStrandSet() (StrandSet method)
computeFaceNormals() (Solid method)
connect() (DummySignal method)
(ProxyObject method)
connection3p() (Strand method)
connection5p() (Strand method)
connections (NucleicAcidPartItemController attribute)
(OligoItemController attribute)
(PartItemController attribute)
connectOligoSignals() (AbstractStrandItemController method)
(StrandItemController method)
connectSignals() (AbstractStrandItemController method)
(OligoItemController method)
(PartItemController method)
(StrandItemController method)
(ViewRootController method)
(VirtualHelixItemController method)
containsBox() (Box method)
containsPoint() (Box method)
copyAbstractSequenceToSequence() (Strand method)
createDeserializedStrand() (StrandSet method)
createStrand() (StrandSet method)
CreateStrandCommand (class in cadnano.strandset.createstrandcmd)
CreateVirtualHelixCommand (class in cadnano.part.createvhelixcmd)
CreateXoverCommand (class in cadnano.part.xovercmds)
crossProduct() (in module cadnano.math.vector)
D
decode() (in module cadnano.fileio.v3decode)
decodePart() (in module cadnano.fileio.v3decode)
deepCopy() (Assembly method)
(ObjectInstance method)
deleteLater() (ProxyObject method)
destroy() (Assembly method)
(ObjectInstance method)
(Oligo method)
(Part method)
(Strand method)
(StrandSet method)
disconnect() (DummySignal method)
(ProxyObject method)
disconnectOligoSignals() (AbstractStrandItemController method)
(StrandItemController method)
disconnectSignals() (AbstractStrandItemController method)
(OligoItemController method)
(PartItemController method)
(StrandItemController method)
(ViewRootController method)
(VirtualHelixItemController method)
displayAbstractSequences() (Oligo method)
doCmd() (in module cadnano.util)
document() (Assembly method)
(Part method)
(Strand method)
(StrandSet method)
documentWasCreatedSignal (TempApp attribute)
doesBoxSpan() (Box method)
doSignals() (TranslateVirtualHelicesCommand method)
DummySignal (class in cadnano.cnproxy)
dump() (Oligo method)
(StrandSet method)
dump5p() (Strand method)
E
editable_properties (Oligo attribute)
(Part attribute)
emit() (DummySignal method)
encodeDocument() (in module cadnano.fileio.v3encode)
encodePart() (in module cadnano.fileio.v3encode)
encodePartList() (in module cadnano.fileio.v3encode)
endMacro() (UndoStack method)
EndpointItemController (class in cadnano.gui.controllers.itemcontrollers.strand.endpointitemcontroller)
endSuperMacro() (in module cadnano.util)
execCommandList() (in module cadnano.util)
F
Face (class in cadnano.math.face)
finalizeCommands() (in module cadnano.util)
findChild() (in module cadnano.util)
findNodeByNode() (QuadtreeBase method)
findNodeByRect() (QuadtreeBase method)
fwdStrand() (AbstractVirtualHelixItem method)
G
generator3pStrand() (Strand method)
generator5pStrand() (Strand method)
getAllPropertiesForIdNum() (AbstractVirtualHelixItem method)
getAngularProperties() (AbstractVirtualHelixItem method)
getAxisPoint() (AbstractVirtualHelixItem method)
getBatch() (in module cadnano)
getBoundsOfEmptyRegionContaining() (StrandSet method)
getColor() (AbstractVirtualHelixItem method)
(Oligo method)
(Part method)
(Strand method)
getComplementStrands() (Strand method)
getDepth() (QuadtreeBase method)
getInstanceProperty() (Part method)
getInverse() (in module cadnano.math.matrix3)
getModelProperties() (AbstractVirtualHelixItem method)
(Oligo method)
(Part method)
getName() (AbstractVirtualHelixItem method)
(Oligo method)
(Part method)
getNeighbors() (StrandSet method)
getNormalMatrix() (in module cadnano.math.matrix3)
getOutlineProperties() (Oligo method)
(Part method)
getOverlappingStrands() (StrandSet method)
getProperty() (AbstractVirtualHelixItem method)
(ObjectInstance method)
(Oligo method)
(Part method)
getRemoveInsertionCommands() (Strand method)
getReopen() (in module cadnano)
getResizeBounds() (Strand method)
getSequenceList() (Strand method)
getSize() (AbstractVirtualHelixItem method)
(Quadtree method)
(QuadtreeBase method)
getStrand() (StrandSet method)
getStrandIndex() (StrandSet method)
getTwistPerBase() (AbstractVirtualHelixItem method)
H
hasInsertionAt() (Strand method)
hasStrandAt() (StrandSet method)
hasXoverAt() (Strand method)
HELICAL_PITCH (HoneycombDnaPart attribute)
(SquareDnaPart attribute)
hex() (Color method)
highIdx() (Strand method)
HoneycombDnaPart (class in cadnano.fileio.lattice)
I
idNum() (AbstractVirtualHelixItem method)
(Strand method)
(StrandSet method)
idx() (Insertion method)
idx3Prime() (Strand method)
idx5Prime() (Strand method)
idxs() (Strand method)
importToPart() (in module cadnano.fileio.v3decode)
indexOfRightmostNonemptyBase() (StrandSet method)
init_logging() (in module cadnano.util)
initAppWithGui() (in module cadnano)
insertIntoChildren() (QuadtreeBase method)
Insertion (class in cadnano.decorators.insertion)
insertionLengthBetweenIdxs() (Strand method)
insertionsOnStrand() (Strand method)
insertNode() (Quadtree method)
(QuadtreeBase method)
instanceDestroyedSignal (ObjectInstance attribute)
instanceParentChangedSignal (ObjectInstance attribute)
instanceProperties() (Part method)
instancePropertyChangedSignal (ObjectInstance attribute)
instances() (Assembly method)
intToColorHex() (in module cadnano.color)
is_temp_app (TempApp attribute)
isActive() (AbstractVirtualHelixItem method)
isEvenParity() (HoneycombDnaPart static method)
(SquareDnaPart static method)
isForward() (Strand method)
(StrandSet method)
isLinux() (in module cadnano.util)
isLoop() (Oligo method)
isMac() (in module cadnano.util)
isOddParity() (HoneycombDnaPart static method)
(SquareDnaPart static method)
isReverse() (StrandSet method)
isSkip() (Insertion method)
isStrandInSet() (StrandSet method)
isWindows() (in module cadnano.util)
J
join() (QuadtreeBase method)
L
latticeCoordToPositionXY() (HoneycombDnaPart static method)
(SquareDnaPart static method)
legacyLatticeCoordToPositionXY() (HoneycombDnaPart static method)
(SquareDnaPart static method)
length() (Insertion method)
(Oligo method)
(Strand method)
(StrandSet method)
loadAllPlugins() (in module cadnano.util)
loadPlugin() (in module cadnano.util)
locString() (Oligo method)
lowIdx() (Strand method)
M
makeRotationZ() (in module cadnano.math.matrix4)
makeTranslation() (in module cadnano.math.matrix4)
markwhite() (in module cadnano.util)
Matrix3 (class in cadnano.math.matrix3)
Matrix4 (class in cadnano.math.matrix4)
MAX_DEPTH (QuadtreeBase attribute)
merge() (Strand method)
MergeCommand (class in cadnano.strandset.mergecmd)
mergeStrands() (StrandSet method)
methodName() (in module cadnano.util)
modifersOnStrand() (Strand method)
ModifyModCommand (class in cadnano.docmodscmd)
multiplyScalar() (in module cadnano.math.vector)
N
n11 (Matrix3 attribute)
(Matrix4 attribute)
n12 (Matrix3 attribute)
(Matrix4 attribute)
n13 (Matrix3 attribute)
(Matrix4 attribute)
n14 (Matrix4 attribute)
n21 (Matrix3 attribute)
(Matrix4 attribute)
n22 (Matrix3 attribute)
(Matrix4 attribute)
n23 (Matrix3 attribute)
(Matrix4 attribute)
n24 (Matrix4 attribute)
n31 (Matrix3 attribute)
(Matrix4 attribute)
n32 (Matrix3 attribute)
(Matrix4 attribute)
n33 (Matrix3 attribute)
(Matrix4 attribute)
n34 (Matrix4 attribute)
n41 (Matrix4 attribute)
n42 (Matrix4 attribute)
n43 (Matrix4 attribute)
n44 (Matrix4 attribute)
name() (Color method)
nearest() (in module cadnano.util)
normal (Face attribute)
normalizeV2() (in module cadnano.math.vector)
normalizeV3() (in module cadnano.math.vector)
normalToPlane() (in module cadnano.math.vector)
nowhite() (in module cadnano.util)
NucleicAcidPartItemController (class in cadnano.gui.controllers.itemcontrollers.nucleicacidpartitemcontroller)
O
ObjectInstance (class in cadnano.objectinstance)
objects() (Assembly method)
Oligo (class in cadnano.oligo.oligo)
oligo() (Strand method)
OligoItemController (class in cadnano.gui.controllers.itemcontrollers.oligoitemcontroller)
oligoPropertyChangedSignal (Oligo attribute)
oligoPropertyChangedSlot() (AbstractOligoItem method)
oligoRemovedSignal (Oligo attribute)
oligoSequenceAddedSignal (Oligo attribute)
oligoSequenceAddedSlot() (AbstractOligoItem method)
oligoSequenceClearedSignal (Oligo attribute)
oligoSequenceClearedSlot() (AbstractOligoItem method)
oligoStrandRemover() (StrandSet method)
overlap() (in module cadnano.util)
P
parent() (ObjectInstance method)
(ProxyObject method)
parse_args() (in module cadnano.util)
Part (class in cadnano.part.part)
part() (AbstractVirtualHelixItem method)
(Oligo method)
(Strand method)
(StrandSet method)
part_connections (VirtualHelixItemController attribute)
partActiveChangedSignal (Part attribute)
partDocumentSettingChangedSignal (Part attribute)
partInstanceAddedSignal (Part attribute)
partInstancePropertySignal (Part attribute)
partItem() (AbstractVirtualHelixItem method)
PartItemController (class in cadnano.gui.controllers.itemcontrollers.partitemcontroller)
partParentChangedSignal (Part attribute)
partPropertyChangedSignal (Part attribute)
partRemovedSignal (Part attribute)
partSelectedChangedSignal (Part attribute)
partZDimensionsChangedSignal (Part attribute)
positionToLatticeCoord() (HoneycombDnaPart static method)
(SquareDnaPart static method)
positionToLatticeCoordRound() (HoneycombDnaPart static method)
(SquareDnaPart static method)
properties() (ObjectInstance method)
proxyConfigure() (in module cadnano.proxyconfigure)
ProxyObject (class in cadnano.cnproxy)
ProxySignal (in module cadnano.cnproxy)
push() (UndoStack method)
Q
Quadtree (class in cadnano.pointquadtree)
QuadtreeBase (class in cadnano.pointquadtree)
query() (QuadtreeBase method)
queryNode() (Quadtree method)
queryPoint() (Quadtree method)
queryRect() (QuadtreeBase method)
R
rcomp() (in module cadnano.util)
read_fasta() (in module cadnano.util)
reapplySequence() (Strand method)
reconnectOligoSignals() (AbstractStrandItemController method)
(StrandItemController method)
rect() (QuadtreeBase method)
redo() (AddInsertionCommand method)
(AddInstanceCommand method)
(AddModCommand method)
(AddModsCommand method)
(ApplyColorCommand method)
(ApplySequenceCommand method)
(ChangeInsertionCommand method)
(CreateStrandCommand method)
(CreateVirtualHelixCommand method)
(CreateXoverCommand method)
(MergeCommand method)
(ModifyModCommand method)
(RefreshOligosCommand method)
(RefreshSegmentsCommand method)
(RemoveInsertionCommand method)
(RemoveInstanceCommand method)
(RemoveModCommand method)
(RemoveModsCommand method)
(RemoveOligoCommand method)
(RemovePartCommand method)
(RemoveStrandCommand method)
(RemoveVirtualHelixCommand method)
(RemoveXoverCommand method)
(RenumberVirtualHelicesCommand method)
(ResizeCommand method)
(ResizeVirtualHelixCommand method)
(SplitCommand method)
(TranslateVirtualHelicesCommand method)
(UndoCommand method)
(UndoStack method)
reference() (ObjectInstance method)
refreshLength() (Oligo method)
RefreshOligosCommand (class in cadnano.part.refresholigoscmd)
RefreshSegmentsCommand (class in cadnano.part.refreshsegmentscmd)
remove() (Oligo method)
removeAllStrands() (StrandSet method)
removeFromPart() (Oligo method)
removeInsertion() (Strand method)
RemoveInsertionCommand (class in cadnano.strand.insertioncmd)
RemoveInstanceCommand (class in cadnano.removeinstancecmd)
RemoveModCommand (class in cadnano.docmodscmd)
removeMods() (Strand method)
RemoveModsCommand (class in cadnano.strand.modscmd)
removeNode() (Quadtree method)
(QuadtreeBase method)
RemoveOligoCommand (class in cadnano.oligo.removeoligocmd)
RemovePartCommand (class in cadnano.part.removepartcmd)
removeStrand() (StrandSet method)
RemoveStrandCommand (class in cadnano.strandset.removestrandcmd)
RemoveVirtualHelixCommand (class in cadnano.part.removevhelixcmd)
RemoveXoverCommand (class in cadnano.part.xovercmds)
RenumberVirtualHelicesCommand (class in cadnano.part.renumbercmd)
resize() (QuadtreeBase method)
(Strand method)
(StrandSet method)
ResizeCommand (class in cadnano.strand.resizecmd)
ResizeVirtualHelixCommand (class in cadnano.part.resizevirtualhelixcmd)
revStrand() (AbstractVirtualHelixItem method)
S
sequence() (Oligo method)
(Strand method)
sequenceExport() (Oligo method)
set() (Box method)
setActive() (AbstractVirtualHelixItem method)
setAlpha() (Color method)
setBatch() (in module cadnano)
setComplementSequence() (Strand method)
setConnection3p() (Strand method)
setConnection5p() (Strand method)
setDocument() (Part method)
setIdxs() (Strand method)
setInstanceProperty() (Part method)
setLength() (Insertion method)
setOligo() (Strand method)
setParent() (ProxyObject method)
setPart() (Oligo method)
setProperty() (AbstractVirtualHelixItem method)
(ObjectInstance method)
(Oligo method)
(Part method)
setReopen() (in module cadnano)
setRgb() (Color method)
setSequence() (Strand method)
setSize() (AbstractVirtualHelixItem method)
setStrand5p() (Oligo method)
setUndoLimit() (UndoStack method)
setZ() (AbstractVirtualHelixItem method)
shallowCopy() (ObjectInstance method)
(Oligo method)
(Strand method)
shouldHighlight() (Oligo method)
signals() (ProxyObject method)
simpleCopy() (StrandSet method)
sixb() (in module cadnano.strand.strand)
size() (Box method)
Solid (class in cadnano.math.solid)
specialUndo() (TranslateVirtualHelicesCommand method)
split() (QuadtreeBase method)
(Strand method)
SPLIT_THRESHOLD (QuadtreeBase attribute)
SplitCommand (class in cadnano.strandset.splitcmd)
splitStrand() (StrandSet method)
SquareDnaPart (class in cadnano.fileio.lattice)
STEP (HoneycombDnaPart attribute)
(SquareDnaPart attribute)
Strand (class in cadnano.strand.strand)
strand3p() (Oligo method)
strand5p() (Oligo method)
strand_connections (VirtualHelixItemController attribute)
strandAddedSlot() (AbstractVirtualHelixItem method)
strandCanBeSplit() (StrandSet method)
strandCount() (StrandSet method)
strandFilter() (Strand method)
(StrandSet method)
strandHasNewOligoSignal (Strand attribute)
strandInsertionAddedSignal (Strand attribute)
strandInsertionChangedSignal (Strand attribute)
strandInsertionRemovedSignal (Strand attribute)
StrandItemController (class in cadnano.gui.controllers.itemcontrollers.strand.stranditemcontroller)
strandModsAddedSignal (Strand attribute)
strandModsChangedSignal (Strand attribute)
strandModsRemovedSignal (Strand attribute)
strandRemovedSignal (Strand attribute)
strandResizedSignal (Strand attribute)
strands() (StrandSet method)
strandsCanBeMerged() (StrandSet method)
strandSelectedChangedSignal (Strand attribute)
StrandSet (class in cadnano.strandset.strandset)
strandSet() (Strand method)
strandsetStrandAddedSignal (StrandSet attribute)
strandType() (Strand method)
(StrandSet method)
strandUpdateSignal (Strand attribute)
strandXover5pRemovedSignal (Strand attribute)
SUB_STEP_SIZE (HoneycombDnaPart attribute)
(SquareDnaPart attribute)
subVectors() (in module cadnano.math.vector)
T
TempApp (class in cadnano.cnproxy)
this_path() (in module cadnano.util)
tostring() (in module cadnano.strand.strand)
totalLength() (Strand method)
trace() (in module cadnano.util)
TranslateVirtualHelicesCommand (class in cadnano.part.translatevhelixcmd)
transpose() (in module cadnano.math.matrix3)
TURNS_PER_STEP (HoneycombDnaPart attribute)
(SquareDnaPart attribute)
TWIST_OFFSET (HoneycombDnaPart attribute)
(SquareDnaPart attribute)
TWIST_PER_BASE (HoneycombDnaPart attribute)
(SquareDnaPart attribute)
U
undo() (AddInsertionCommand method)
(AddInstanceCommand method)
(AddModCommand method)
(AddModsCommand method)
(ApplyColorCommand method)
(ApplySequenceCommand method)
(ChangeInsertionCommand method)
(CreateStrandCommand method)
(CreateVirtualHelixCommand method)
(CreateXoverCommand method)
(MergeCommand method)
(ModifyModCommand method)
(RefreshOligosCommand method)
(RefreshSegmentsCommand method)
(RemoveInsertionCommand method)
(RemoveInstanceCommand method)
(RemoveModCommand method)
(RemoveModsCommand method)
(RemoveOligoCommand method)
(RemovePartCommand method)
(RemoveStrandCommand method)
(RemoveVirtualHelixCommand method)
(RemoveXoverCommand method)
(RenumberVirtualHelicesCommand method)
(ResizeCommand method)
(ResizeVirtualHelixCommand method)
(SplitCommand method)
(TranslateVirtualHelicesCommand method)
(UndoCommand method)
(UndoStack method)
UndoCommand (class in cadnano.undocommand)
UndoStack (class in cadnano.undostack)
undoStack() (Assembly method)
(CNObject method)
(Oligo method)
unloadedPlugins() (in module cadnano.util)
updateIdx() (Insertion method)
V
v1 (Face attribute)
v2 (Face attribute)
v2AngleBetween() (in module cadnano.math.vector)
v2Distance() (in module cadnano.pointquadtree)
v2DistanceAndAngle() (in module cadnano.math.vector)
v2dot() (in module cadnano.math.vector)
v3 (Face attribute)
v3SetX() (in module cadnano.math.vector)
v3SetY() (in module cadnano.math.vector)
v3SetZ() (in module cadnano.math.vector)
Vector2 (class in cadnano.math.vector)
Vector3 (class in cadnano.math.vector)
ViewRootController (class in cadnano.gui.controllers.viewrootcontroller)
VirtualHelixItemController (class in cadnano.gui.controllers.itemcontrollers.virtualhelixitemcontroller)
virtualHelixPropertyChangedSlot() (AbstractVirtualHelixItem method)
virtualHelixRemovedSlot() (AbstractVirtualHelixItem method)
X
x (Vector2 attribute)
(Vector3 attribute)
Y
y (Vector2 attribute)
(Vector3 attribute)
Z
z (Vector3 attribute)
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